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Survival-associated eQTLs across different cancer types


We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "STAD"
e.g., "rs1824937"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LGG rs11202672 chr10:89945934 A/G 6.72E-5 404 14.78 18.72 5.52 KM Plot
LGG rs11202674 chr10:89947268 G/A 6.72E-5 404 14.78 18.72 5.52 KM Plot
LGG rs112042658 chr1:247300713 A/G 0 398 15.33 15.15 3.2 KM Plot
LGG rs112097371 chr17:48526670 G/A 2.0E-5 404 15.17 17.67 14.12 KM Plot
LGG rs112102583 chr2:60594737 A/G 5.71E-5 403 15.33 17.7 8.03 KM Plot
LGG rs112103416 chr7:55920433 A/G 0 401 15.18 16.08 3.77 KM Plot
LGG rs112166173 chr5:167753612 C/T 4.95E-8 398 15.93 14.7 15.7 KM Plot
LGG rs112173307 chr16:67722869 C/T 2.77E-11 407 15.17 18.37 6.47 KM Plot
LGG rs112201657 chr6:36019076 T/C 1.0E-9 406 15.67 14.95 6.15 KM Plot
LGG rs112202188 chr6:36042948 C/A 1.01E-9 405 15.7 14.95 6.15 KM Plot
LGG rs112249319 chr6:36056430 C/T 9.41E-10 407 15.47 15.2 6.15 KM Plot
LGG rs112252560 chr9:126950283 G/C 1.25E-6 407 15.37 11.1 12.92 KM Plot
LGG rs112285375 chr10:909165 CA/C 2.66E-6 405 15.17 17.73 10.57 KM Plot
LGG rs11230694 chr11:61194546 T/C 9.71E-5 405 16.68 17.73 14.47 KM Plot
LGG rs11230701 chr11:61226398 A/G 7.86E-5 407 14.5 17.67 16.68 KM Plot